PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0051s0049.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 225aa    MW: 24185.1 Da    PI: 9.7157
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0051s0049.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-202777155
                  AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++++GVr ++ +gr++AeIrd ++    ++r++lg+f++ae Aa+a++aa+++l+g
  Kaladp0051s0049.1.p 27 PKFRGVRKRP-WGRFAAEIRDpWK----KARVWLGTFDSAEAAARAYDAAARSLRG 77
                         79********.**********883....5*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-132777IPR001471AP2/ERF domain
CDDcd000189.61E-192785No hitNo description
SMARTSM003803.7E-362891IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-222886IPR016177DNA-binding domain
PROSITE profilePS5103223.4852885IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-312885IPR001471AP2/ERF domain
PRINTSPR003677.1E-102940IPR001471AP2/ERF domain
PRINTSPR003677.1E-105167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGKVRGGAAA LGNQVREAPL AIGSAEPKFR GVRKRPWGRF AAEIRDPWKK ARVWLGTFDS  60
AEAAARAYDA AARSLRGPKA RTNFPTPPSS PHHAPNDLTA AQRFYSSNAF REQQIIDRAN  120
PPRPASSSMS STVESFSGPR RHPALHPPSL TTVASRRFPK SPPVTADDCH SDCDSSSDVV  180
DGVAEAGVTT SFKKPLAFDL NFPPLDDLEF VGGENEMRCT ALCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-192990668ATERF1
3gcc_A8e-192990668ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001295747.12e-59ethylene-responsive transcription factor 3-like
SwissprotO803396e-46ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A0V0HV084e-68A0A0V0HV08_SOLCH; Putative ethylene-responsive transcription factor 3-like
STRINGPGSC0003DMT4000373591e-58(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.11e-32ethylene responsive element binding factor 3